Maxime Garcia
01/16/2026, 3:15 PMThomas Danhorn
01/16/2026, 3:54 PM? as strand does not make sense, and any tool has no choice but to refuse to deal with this. Work-arounds (in order of preference):
⢠Find a better GTF. (Have a look at Ensembl; I have a GTF from release 108 lying around which only has + or - in the strand column.)
⢠Find out what the strand should be and replace the ? with the appropriate symbol.
⢠Remove all GTF entries without proper strand (this is especially appropriate if those entries are not meant to denote proper exons or transcripts anyway, but something else).Thomas Danhorn
01/16/2026, 3:55 PMMaxime Garcia
01/16/2026, 4:01 PMMaxime Garcia
01/16/2026, 4:01 PMJonathan Manning
01/16/2026, 4:03 PMMaxime Garcia
01/16/2026, 4:09 PM