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# rnaseq
t
Transcripts are inherently stranded, so
?
as strand does not make sense, and any tool has no choice but to refuse to deal with this. Work-arounds (in order of preference): • Find a better GTF. (Have a look at Ensembl; I have a GTF from release 108 lying around which only has
+
or
-
in the strand column.) • Find out what the strand should be and replace the
?
with the appropriate symbol. • Remove all GTF entries without proper strand (this is especially appropriate if those entries are not meant to denote proper exons or transcripts anyway, but something else).
Sorry, I don't do social media, so feel free to paste this into BlueSky.
m
Thanks for you're help
šŸ‘ 1
I would have gone with answer 3, or 4 (just put any strand)
j
Also point them here for support šŸ™‚
āž• 1
m
Done
thankyou 1