Hi all, RNASeq newbie here. Our internship student will look for new/*unknown* transcripts in high-coverage RNASeq data. As far as I understand (am I wrong ?) Stringtie generates a GTF (including new transcripts ?) but I don't think there is a process (

gffcompare

) comparing the input gtf with the new gtf (?). I'm not sure if this fits in the current nfcore-rnaseq pipeline. Otherwise, do you think it would be worth submit a PR to add this task in the workflow ?

Feel free to make a PR so we can discuss on the basis of what the implementation looks like 🙂