lilin
11/25/2025, 2:55 AMrnaseq (v3.13.2) with Nextflow (v23.10.0) using the -profile docker on an ARM64 server.
Error message:
Command error:
11:04AM WRN Error running in a new user namespace - fork/exec /usr/bin/fusion: operation not permitted
11:04AM WRN cannot apply Nextflow profile :: unknown remote store for '' work prefix
11:04AM FTL mount.go:311 > mounting filesystem error="exec: \"/bin/fusermount\": stat /bin/fusermount: no such file or directory"
11:05AM WRN timeout waiting for FUSE mount
11:05AM ERR on file system force umount error="operation not permitted"
11:05AM WRN cannot apply Nextflow profile :: unknown remote store for '' work prefix
11:05AM FTL mount.go:311 > mounting filesystem error="exec: \"/bin/fusermount\": stat /bin/fusermount: no such file or directory"
11:05AM WRN timeout waiting for FUSE mount
11:05AM ERR on file system force umount error="operation not permitted"
11:05AM WRN cannot apply Nextflow profile :: unknown remote store for '' work prefix
11:05AM FTL mount.go:311 > mounting filesystem error="exec: \"/bin/fusermount\": stat /bin/fusermount: no such file or directory"
11:06AM WRN timeout waiting for FUSE mount
11:06AM ERR on file system force umount error="operation not permitted"
11:06AM WRN cannot apply Nextflow profile :: unknown remote store for '' work prefix
fasta_gtf_filter - 2025-11-24 110647,552 INFO: Extracted chromosome sequence names from GRCh38_genome.fa
fasta_gtf_filter - 2025-11-24 110654,445 INFO: Extracted 1772462 matching sequences from GRCh38_genes.gtf into GRCh38_genome.filtered.gtf
11:06AM ERR on FUSE sigterm send error="os: process already finished"What is causing these errors, and how can they be resolved?