Hi, I'm a new user of nfcore/rnaseq, I encountered...
# help
s
Hi, I'm a new user of nfcore/rnaseq, I encountered errors during fastqc steps (shown below). Does anyone know what should I do to avoid this?
#️⃣ 1
c
Hi, @sisi.chen.25! Slack uses channels to organise discussions. Press the
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more
option on the left sidebar. Then hover over Your organisation, and finally select Channels to browse. Each nf-core pipeline has it’s own channel (e.g. #CE8SSJV3N). Please post any questions about specific pipelines in the relevant channel. If you’re not sure where to post your message, please ask @Igor Trujnara for help.
i
That said, it's likely due to OOM errors, for which nf-core pipelines are usually set to retry with more memory. You should double-check your node capacity and the allocations that are used in the run.
s
Ok, I see, the following error messages include "# There is insufficient memory for the Java Runtime Environment to continue.", I will retry it with larger memory allocated to this process. Thank you so much!