Join Slack
Powered by
Hello all, I was trying to run funcprofiler with t...
# funcprofiler
m
Mausumi
07/01/2026, 11:02 AM
Hello all, I was trying to run funcprofiler with the command: nextflow run nf-core/funcprofiler -r dev -profile singularity --input samplesheet.csv --databases database.csv --outdir results --run_humann_3 The run is failing and throwing me an error:
Mausumi
07/01/2026, 11:03 AM
How do I deal with it so that my pipeline runs?
m
mashehu
07/01/2026, 11:03 AM
https://nf-co.re/blog/2026/parameter-types
mashehu
07/01/2026, 11:03 AM
tldr; don't use cli parameters, use a params file instead
m
Mausumi
07/01/2026, 11:04 AM
Thanks
2
Views
Open in Slack
Previous
Next