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nf-core

:x: *sarek/test_full_germline_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_germline_aws *Duration*
4h 36m 55s *Status*
:x: Failed *Error Message*
```4:10PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
4:10PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0894aba73154faf0f instance-type=c6id.24xlarge
4:10PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
FUSION_GPU_USED=false
4:13PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: D2YMSGC2NFH3JTTB, HostID: 9jRGfnRkXmVV5xKenvRWqFiMIiehvj974vNmtzocK58jkWJz6KdGy/kFlKP3WCf/0PBU3CiV5KU=, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=45411 id=/s3/nf-core-awsmegatests/work/sarek/work-b97952e5bac68d5deb93d4a3349a45f146be9830/test_full_germline_aws/6b/2909eae01b0e78dce5144b03203575/NA12878.recal.cram length=42412802048 offset=0
4:13PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=45413 id=/s3/nf-core-awsmegatests/work/sarek/work-b97952e5bac68d5deb93d4a3349a45f146be9830/test_full_germline_aws/6b/2909eae01b0e78dce5144b03203575/NA12878.recal.cram.d91ulc6gd19c75mr1mjg.42547019776.d91ul4egd19c75mr1jp0.chk length=134217728 offset=0
4:13PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=45414 id=/s3/nf-core-awsmegatests/work/sarek/work-b97952e5bac68d5deb93d4a3349a45f146be9830/test_full_germline_aws/6b/2909eae01b0e78dce5144b03203575/NA12878.recal.cram.d91uldegd19c75mr1mkg.42681237504.d91ul4egd19c75mr1jp0.chk length=134217728 offset=0
4:13PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=45415 id=/s3/nf-core-awsmegatests/work/sa...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws -params-file '<https://api.cloud.seqera.io/ephemeral/hGabmokNGnmym_GNhuRxPQ.json>' -with-tower -r b97952e5bac68d5deb93d4a3349a45f146be9830 -profile test_full_germline_aws``` Jun 30, 2026 at 4:13 PM