I've run two specific commits. With

e565a323e7

I replicate my run (keeping

GB_GCA_902827205.1~LR792634.1

) but with

5a3b50c7da

I lose it. If you try

nextflow run biodiversitydata-se/sbdi-phylomarkercheck -r e565a323e7 -profile docker -resume -params-file arc-ssu-r232.params.yaml

(maybe a

nextflow pull -r e565a323e7

before the run ) let's see if you also keep this sequence. This is messier than it should be. I will tidy things up and make a new release this week. Thanks for noticing this and it's good to have a test case.