A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_aws *Duration*
2h 23m 14s *Status*
:x: Failed *Error Message*
```11:24AM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
11:24AM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0b5ffef4930fec0e2 instance-type=c6id.8xlarge
11:24AM INF [seqera-fusion] starting incremental snapshot timer interval=300000
11:29AM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
11:34AM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
11:38AM ERR [seqera-fusion] Failed to read directory entries. Check the `error` field for the underlying cause and report this issue if it persists. error="element not found" goid=312 operation=ReadDir path=/s3/nf-core-awsmegatests/work/sarek/work-dev/test_full_aws/74/a981be336893c4e5b2840199f62ae5/.fusion/tmp/hsperfdata_root
FUSION_GPU_USED=false
11:38AM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: H2WWTK1M4T5BK0AH, HostID: 5gCFfbbVoo+atxDdNOA2dAKeU0y7fpRTUjDCBk2GeX71D69cMCVe3PC0c+KjnlhvC2gdt86wxAL35DgX20rHvlpBwDrFf4N7, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=33409 id=/s3/nf-core-awsmegatests/work/sarek/work-dev/test_full_aws/74/a981be336893c4e5b2840199f62ae5/HCC1395N_chr1_11981-12351.recal.cram length=5905580032 offset=0
11:38AM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=33422 id=/s3/nf-core-awsmegatests/work/sarek/work-dev/test_full_aws/74/a981be336893c4e5b2840199f62ae5/HCC1395N_chr1_11981-12351.recal.cram.d91qj5340r4s75e4a78g.7516192768.d91qet340r4s75e4a1bg.chk length=134217728 offset=0
11:38AM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=33425 id=/s3/nf-core-awsmegatests/w...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws -params-file '<https://api.cloud.seqera.io/ephemeral/pMJaMmr1oaV-MXvdVWYOwQ.json>' -with-tower -r dev -profile test_full_aws``` Jun 30, 2026 at 11:39 AM