A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *metatdenovo/test_full* failed :crying_cat_face: *Run Name*
astonishing_lavoisier *Duration*
5h 20m 6s *Status*
:x: Failed *Error Message*
```2026-06-26 14:45:58 - MEGAHIT v1.2.9
2026-06-26 14:45:59 - Using megahit_core with POPCNT and BMI2 support
2026-06-26 14:45:59 - Convert reads to binary library
2026-06-26 14:47:10 - b'INFO  sequence/io/sequence_lib.cpp  :   75 - Lib 0 (/fusion/s3/nf-core-awsmegatests/work/metatdenovo/work-4d0307aa7d34575aa7891a7b4996ffe19e774cd9/9f/467bd1fc700aad17bed2e84015d437/ERR978615.processed.fastq.gz): interleaved, 40525544 reads, 101 max length'
2026-06-26 14:48:31 - b'INFO  sequence/io/sequence_lib.cpp  :   75 - Lib 1 (/fusion/s3/nf-core-awsmegatests/work/metatdenovo/work-4d0307aa7d34575aa7891a7b4996ffe19e774cd9/9f/467bd1fc700aad17bed2e84015d437/ERR978616.processed.fastq.gz): interleaved, 45305414 reads, 101 max length'
2026-06-26 14:50:59 - b'INFO  sequence/io/sequence_lib.cpp  :   75 - Lib 2 (/fusion/s3/nf-core-awsmegatests/work/metatdenovo/work-4d0307aa7d34575aa7891a7b4996ffe19e774cd9/9f/467bd1fc700aad17bed2e84015d437/ERR978614.processed.fastq.gz): interleaved, 83969516 reads, 101 max length'
2026-06-26 14:53:40 - b'INFO  sequence/io/sequence_lib.cpp  :   75 - Lib 3 (/fusion/s3/nf-core-awsmegatests/work/metatdenovo/work-4d0307aa7d34575aa7891a7b4996ffe19e774cd9/9f/467bd1fc700aad17bed2e84015d437/ERR978612.processed.fastq.gz): interleaved, 91205786 reads, 101 max length'
2026-06-26 14:53:40 - b'INFO  utils/utils.h                 :  152 - Real: 461.8109\tuser: 129.5027\tsys: 36.2367\tmaxrss: 281384'
2026-06-26 14:53:40 - k-max reset to: 119 
2026-06-26 14:53:40 - Start assembly. Number of CPU threads 1 
2026-06-26 14:53:40 - k list: 21,29,39,59,79,99,119 
2026-06-26 14:53:40 - Memory used: 214748364800
2026-06-26 14:53:40 - Extract solid (k+1)-mers for k = 21 
2026-06-26 16:56:58 - Build graph for k = 21 
2026-06-26 17:03:01 - Assemble contigs from SdBG for k = 21
2026-06-26 17:52:17 - Local assembly for k = 21
2026-06-26 17:59:32 - Extract iterative edges from k = 21 to 29 
2026-06-26 18:20:10 - Build graph for k = 29 
2026-06-26 18:23:17 - Assemble contigs from SdBG for ...``` *Command Line*
```nextflow run '<https://github.com/nf-core/metatdenovo>' -name astonishing_lavoisier -params-file '<https://api.cloud.seqera.io/ephemeral/nNvNpUDyK_AA8JQM4_dvmg.json>' -with-tower -r 4d0307aa7d34575aa7891a7b4996ffe19e774cd9 -profile test_full``` Jun 26, 2026 at 6:47 PM