Sharing a walkthrough of our job template system f...
# shameless-promo
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Sharing a walkthrough of our job template system for running nf-core workflows on managed Slurm. Clusterra deploys Slurm into your own AWS account — nf-core pipelines (sarek, rnaseq, proteomics, FEP) launch from one-click templates with spot partitions wired automatically and checkpoint-resume on preemption. Numbers from our Sarek + Parabricks benchmark: → 30× WGS, $2.59/sample, SNP F1 = 0.9966 vs GIAB v4.2.1 → Unmodified nf-core/sarek pipeline, n=3 clean reproductions Watch the template walkthrough:

https://www.youtube.com/watch?v=J5nshEZHy-w▾

Full methodology: clusterra.cloud/blogs/sarek-parabricks-case-study.html Happy to discuss the nf-core + Slurm + spot integration.