Sharing a walkthrough of our job template system for running nf-core workflows on managed Slurm.
Clusterra deploys Slurm into your own AWS account — nf-core pipelines (sarek, rnaseq, proteomics, FEP) launch from one-click templates with spot partitions wired automatically and checkpoint-resume on preemption.
Numbers from our Sarek + Parabricks benchmark:
→ 30× WGS, $2.59/sample, SNP F1 = 0.9966 vs GIAB v4.2.1
→ Unmodified nf-core/sarek pipeline, n=3 clean reproductions
Watch the template walkthrough:
https://www.youtube.com/watch?v=J5nshEZHy-w▾
Full methodology: clusterra.cloud/blogs/sarek-parabricks-case-study.html
Happy to discuss the nf-core + Slurm + spot integration.