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I'm writing tests for new deacon index modules, bu...
# test-data
p
I'm writing tests for new deacon index modules, but for this I'd need deacon index files as the input. Would it be possible to add these to the test-datasets repo? Would these go on a separate branch for this module and do I just create a PR myself? I'm trying to find my way through https://nf-co.re/docs/specifications/test-data/modules, but a bunch of the links appear to be not resolving correctly. The size of these files would be minimal. I tried the sarscov2 and ecoli genomes as an example:
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16K     genome.fa.gz
48K     genome.fa.gz.idx
12K     genome.fasta.gz
32K     genome.fasta.gz.idx
m
They should be in the modules branch. Either in the genomics folder or the confusingly named delete_me
p
Thanks, Matthias! I'll make a PR to upload them.
While I have you: any idea where this link was supposed to point? Then we can fix the docs page too: https://nf-co.re/docs/tutorials/tests_and_test_data/test_data#field-specific-guidance
j
Hrm we should remove that link
Or transfer it over... I'll look into that this week
p
Thanks!
j
If don't mind testing @Pieter Moris!
p
Haven't gone through everything, but the intro already pointed me to nf-test setup, which actually fulfills my needs much better than adding new test data 😄
🎉 1
Looks good to me! Links appear to work, as do the commands that I checked, and the github repo structure seems to match what is described. So all in all quite clear to someone quite new to the test repo like I am.
j
OK awesome, thank you very much for confirming!
👍 1
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