Niklas Schandry
06/19/2026, 7:01 AMgroovy.lang.MissingPropertyException: No such property: task for class: nextflow.script.dsl.ProcessDslV1
This originates fromHowever, I have never heard of this incompatibility before (the modules also all contain the(line 6), inside a container directive that referencesmodules/nf-core/samtools/stats/main.nf. Under Nextflow 25.10.4, thetask.ext.singularity_pull_docker_containerobject isn't accessible inside thetaskdirective closure in the way this module expects — it's a known incompatibility with some older nf-core module patterns on newer Nextflow versions.container
task.ext.singularity_pull_docker_container directive in their latest version). Can anyone confirm if this is actually a real issue?Niklas Schandry
06/19/2026, 7:31 AMpontus
06/19/2026, 9:34 AMNiklas Schandry
06/19/2026, 9:39 AMNiklas Schandry
06/19/2026, 9:40 AMbam_stats_samtools expecting a fasta index, which is not really described in the module (mb I am just not getting it)