Hello viralrecon team! Here there's a PR improving...
# viralrecons
Sarai
06/16/2026, 10:02 AMHello viralrecon team! Here there's a PR improving the BLAST results reporting to perform enterovirus genotyping suggestions:
https://github.com/nf-core/viralrecon/pull/574
It would be nice to have an external review appart from @Anna Norén , @Lili Andersson-Li and I, as the three of us have been working in the scripts
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Joon Klaps
06/16/2026, 10:04 AMYou have an example report i can look at?
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Sarai
06/16/2026, 10:12 AMYes! This is a test a run while ago, but maybe @Anna Norén has a more recent one
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Sarai
06/16/2026, 10:58 AM@Anna Norén can you have a look to Joon's comments on the PR¿
Sarai
06/16/2026, 10:59 AMMost of the comments are on the python script, so maybe you and Lili should discuss it a little bit on your side?
Sarai
06/16/2026, 11:00 AMMaybe you can keep the viralrecon meeting without me and speak about this if you find it usefull
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Anna Norén
06/16/2026, 11:03 AMYes I'll have a look at the PR comments with Lili. Here are two updated reports, one normal and one we call the error one.
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Ammar Aziz
06/17/2026, 12:37 AMWhen I last looked at enteroviruses, I found picornaviridae.com incomplete or hasn't been updated in a few years. I think https://ictv.global/report/chapter/picornaviridae/picornaviridae/enterovirus might be a good resource to consider.
Ammar Aziz
06/17/2026, 12:44 AMThe report is really cool btw, clear and concise.
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