Hi @Florian Heyl @Dongze He,

proseg

,

baysor

and

opt

are now available as

nf-core modules

and can be installed in spatialaxe. These also run with

bioconda

now. We can add these in the next version of the pipeline.

Opt subworklfow

is also part of the nf-core subworkflows that can be installed too. This would also enable us to add the conda profile back in the pipeline.