❌ sarek/test_full_germline_aws failed 😿 Run Name sarek_test_full_germline_aws_5 Duration 26m 41s Status ❌ Failed Error Message

1:07PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
1:07PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-075b14f4b309b76e3 instance-type=c6i.16xlarge
1:07PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
2026-06-15 13:07:58.260141: I tensorflow/core/util/port.cc:110] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2026-06-15 13:07:58.261812: I tensorflow/tsl/cuda/cudart_stub.cc:28] Could not find cuda drivers on your machine, GPU will not be used.
2026-06-15 13:07:58.295037: I tensorflow/tsl/cuda/cudart_stub.cc:28] Could not find cuda drivers on your machine, GPU will not be used.
2026-06-15 13:07:58.295401: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
2026-06-15 13:07:58.987725: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I0615 13:08:00.077742 139754113065408 run_deepvariant.py:635] Creating a directory for intermediate results in tmp
I0615 13:08:00.078916 139754113065408 run_deepvariant.py:838] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': 'eyJ4NWMiOlsiTUlJQ2R6Q0NBZGlnQXdJQkFnSUdBWjY1cFFXSE1Bb0dDQ3FHU000OUJBTUNNSE14Q3pBSkJnTlZCQVlUQWtWVE1SSXdFQVlEVlFRSURBbENZWEpqWld4dmJtRXhFakFRQmdOVkJBY01DVUpoY21ObGJHOXVZVEVVTUJJR0ExVUVDZ3dMVTJWeFpYSmhJRWx1WXk0eEVqQVFCZ05WQkFzTUNWTmxjV1Z5WVNCRFFURVNNQkFHQTFVRUF3d0pVMlZ4WlhKaElFTkJNQjRYRFRJMk1EWXhNakF4TWpReU1Gb1hEVEkyTURZeU1EQXhNalF5TUZvd2F6RU9NQXdHQTFVRUF3d0ZkRzkzWlhJeEZEQVNCZ05WQkFvTUMxTmxjV1Z5WVNCSmJtTXVNUTR3REFZRFZRUUxEQVZVYjNkb...

Command Line

nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws_5 -params-file '<https://api.cloud.seqera.io/ephemeral/lOEAJ2MWLnU3I3NvYAk4uw.json>' -with-tower -r 375c449933215d19e26f645fd61c5bc38580e2da -profile test_full_germline_aws -resume f26ab704-e630-4ff0-96b8-1d08771c7354

Jun 15, 2026 at 1:08 PM

Deepvariant is still broken