A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

I love the Slack bot with the <#CTY8L26C8> results :star-struck:
I’m having some weird syntax errors with nf-core/airrflow on AWS megatests that aren’t appearing in the CI tests or any other pipeline tests, which I’m a bit puzzled about. Is there some special configuration on strict syntax disabled or something of the sort for AWS megatests?

which nextflow version are you using on the CI / local testing?

The latest `N E X T F L O W  ~  version 26.04.3`

<@UPC8CHDKQ> I saw that you probably launched a test with the `syntax parser enabled` and this solved the issues, the tests now run successfully on AWS! Is there something I should change in the pipeline to do that by default?

Thank you so much for all your help with aws!

yes that's right. I am not sure how to pass this on via the megatests right now. I'll try to look into it later this week. I am guessing we can set the flag somewhere in the API call