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Is there a way to create a container with the Pola...
# nostupidquestions
e
Is there a way to create a container with the Polars rt64 extra enabled in Seqera Containers, equivalent to 
pip install polars[rt64]
?
m
e
This might work as an alternative if I install it in the same env with polars...let me check.. thanks 😄
👍🏻 1
m
Get claude to write you the conda env for it, and then use the wave cli to make the container for it.
e
Reporting back; It worked by adding 
polars-runtime-64
(thanks @Matthias De Smet!) next to 
polars
in the same env/container, so I didn't have to try the conda -> wave -> container combo. Good to have that in the arsenal though, for similar future cases that do not provide or work with such runtimes and need specific 
extras
through pip installation.
m
p
Yeah conda can't do square bracket optional deps
e
I think conda can, it's just not possible with seqera containers through the UI
p
How does the conda spec look for that?
I just kicked off an agent to add in a raw textbox option to the web UI to allow folks to handle these more complex edge cases. I've been meaning to add it for ages.
❤️ 1
e
Something like this:
Copy code
---
# yaml-language-server: $schema=<https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json>
channels:
  - conda-forge
  - bioconda
dependencies:
  - conda-forge::orjson=3.11.4
  - conda-forge::pip=25.3
  - conda-forge::python=3.14.0
  - pip:
      - polars[rt64]==1.41.2
Oh it's through 
pip
, you are right 😛
this 1
m
Wave can handle that yaml can't it? I'm almost certain I've done it, or someone else has.
m
Yes it can! Check out module for multiqcsav
p
Yeah pip is fine
Just saying that conda can't do the square brackets
That's why you need the variants of the packages with -whatever if you want it to be pure conda
(Pip is suboptimal as isn't described in the conda lock file, and seems to break more often)
Hi folks: Small public service announcement - I updated https://seqera.io/containers/ today so that you can edit a 
environment.yml
file directly within the web page. This means that you can now pin to specific conda build numbers, something that has come up a few times. This has always been possible via the CLI, but few are aware of it. So I also added a hint about the CLI when you're editing the environment.yml file 🙂
❤️ 2
⭐ 1
m
This will be such a great help when updating modules 😄 no more messing about with singularity checksums
🎉 1
p
Tutorial:

https://youtu.be/DkRgor8Mx4A?si=aMKXUziclAux73Um▾

👀 1
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