<#2089 Add flowcell_samplesheet_b.v1.csv and flowc...
# test-data
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#2089 Add flowcell_samplesheet_b.v1.csv and flowcell_samplesheet_b.v2.csv for samplesheetparser/merge tests Pull request opened by chaitanyakasaraneni This pull request introduces two new sample sheet files for Illumina sequencing runs, each corresponding to a different version and format of sample sheet specification. These files define metadata, sequencing parameters, and sample information for separate flowcell runs, supporting downstream data processing and analysis. New sample sheet for legacy Illumina workflow (v1 format): • Added
flowcell_samplesheet_b.v1.csv
, which provides a sample sheet in the standard Illumina v1 format. This includes sections for
[Header]
,
[Reads]
,
[Settings]
, and
[Data]
, specifying run details, sequencing parameters, adapter sequences, and sample assignments for lanes 3 and 4. New sample sheet for BCL Convert workflow (v2 format): • Added
flowcell_samplesheet_b.v2.csv
, formatted for the BCL Convert workflow (v2). This sheet includes
[Header]
,
[Reads]
,
[BCLConvert_Settings]
, and
[BCLConvert_Data]
sections, with updated field names and additional run parameters (e.g., override cycles, software version), as well as sample and index information for the same set of samples as the v1 sheet. nf-core/test-datasets
Review on #2089 Add flowcell_samplesheet_b.v1.csv and flowcell_samplesheet_b.v2.csv for samplesheetparser/merge tests Review approved by charles-plessy on chaitanyakasaraneni's pull request It looks good to me. This said Copilot-sensei and Gemini-sensei both say that "PCR-Free" and "Amplicon" are usually not found in the same sample sheet… nf-core/test-datasets