Hi @mashehu! Thank you! I pulled-rebased

test_full

(apparently, I had some unpushed commits on my side), and now it gives the same error as the one described by Kata in the thread above:

-[nf-core/cageseq] Pipeline completed with errors-
WARN: Singularity cache directory has not been defined -- Remote image will be stored in the path: /mnt/scratch/slava/cageseq_test/singularity -- Use the environment variable NXF_SINGULARITY_CACHEDIR to specify a different location
WARN: Input tuple does not match tuple declaration in process `NFCORE_CAGESEQ:CAGESEQ:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS` -- offending value: [sacCer3chrIII, /mnt/biggley/home/slava/projects/leancage_dev/reproduce_test_data/sacCer3chrIII.fa]
ERROR ~ No such variable: task

 -- Check script 'cageseq/modules/nf-core/samtools/stats/main.nf' at line: 6 or see '.nextflow.log' file for more details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs for common issues: <https://nf-co.re/docs/running/troubleshooting>

 -- Check '.nextflow.log' file for details

(Plus a warning about input and output of the

samtools stats

module.)