Hei, @Slava Sidorov mentioned that dev still doesn't work due to mandatory genome input, so I also tried and it was good for me. Did you pull the latest changes? However, what was not good is how multiqc is called. It is now expecting a single tuple with 6 entries instead of 6 channels. I checked rnaseq and there is a lot of things going on with mutliqc that we don't do yet. @mashehu do you know about how to address these changes?

yes, can have a look.

thanks!

merged in now https://github.com/nf-core/cageseq/pull/106 that should have (besides other things) the fix for the multiqc inputs