#1932 Add HDL shared test fixtures Pull request opened by lyh970817 PR checklist • I read the test-data specifications • I tried testing my module with available data and there is no compatible data in test-datasets • If I added data: I described the new files on the root

README.md

• If I modified data: I checked whether the root

README.md

is still up-to-date • I made sure to submit the smallest dataset possible (e.g. try .tar.gz for larger directories) This PR adds the smallest shared HDL fixture set needed to exercise HDL-compatible LD reference inputs for the companion module submission. Existing

popgen

fixtures do not provide the HDL reference directory layout consumed by

hdl/h2

and

hdl/rg

. All HDL files in this branch are fully synthetic toy fixtures generated in-repo by

data/genomics/homo_sapiens/popgen/hdl/generate_toy_hdl_data.R

to match HDL's expected format and layout; they are compatible with HDL inputs and do not redistribute an upstream HDL reference bundle. Added files: •

reference/chr1.1_toy.bim

•

reference/chr1.1_toy.rda

•

reference/chr1.2_toy.bim

•

reference/chr1.2_toy.rda

•

reference/toy_snp_counter.RData

•

reference/toy_snp_list.RData

•

sumstats/trait1_canonical.tsv

•

sumstats/trait2_canonical.tsv

Size footprint: 915 bytes total. These toy HDL inputs were minimized to the smallest set that still supports real HDL execution for the companion module tests. Companion modules PR: nf-core/modules#10912 nf-core/test-datasets