A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

&gt; Merged <#C0493FQQZ3P> to latest template - still a lot of structural work to do, but at least now linting passes.
&gt; <https://github.com/nf-core/rnasplice/pull/195>
I know this is massive but it seems that the pipeline went orphaned, so I had to implement a lot of changes to make it work with the latest template. Now the tests pass also with nextflow 26.04.2. This will be followed by PRs for improvement of the logic as there's still some work to do.

I've reviewed this, and it is fine once you have updated the changelog. But please smaller PRs in future.

But thank you for the work you have put into this!

Thanks! Yes, the following PRs will be on individual improvements :slightly_smiling_face:

You may want to think about how to format the Changelog. <https://github.com/nf-core/sarek/blob/master/CHANGELOG.md?plain=1|Most> <https://github.com/nf-core/rnaseq/blob/master/CHANGELOG.md?plain=1|pipelines> <https://github.com/nf-core/demultiplex/blob/master/CHANGELOG.md?plain=1|link> to the individual PRs for each change, to make it easy to refer back to them.

Also it would be a good idea to bump the version in the pipeline to include `dev` in the name.

(as was being done here: <https://github.com/nf-core/rnasplice/pull/143>)

I would probably set to v1.1.0dev at the moment. You can use `nf-core pipelines bump-version` for this

Yes, I was thinking the same, just wasn't sure