<#2073 Add clustering test tsv> Pull request opene...
# test-data
g
#2073 Add clustering test tsv Pull request opened by dbaku42 Add test dataset for pcaclustering This PR adds a new minimal dataset (
test.tsv
) for the
pcaclustering
functionality within the clustering test suite. The dataset is added under:
data/genomics/homo_sapiens/popgen/clustering/
and is intended to support reproducible unit testing of PCA-based clustering workflows. This addition is related to: nf-core/modules#11372 Purpose • Enable robust testing of
pcaclustering
logic in nf-core modules • Provide a minimal, reproducible input dataset for CI and nf-test execution • Ensure compatibility with existing clustering test assets (
test_features.tsv
,
test_clusters.csv
, etc.) Dataset generation The
test.tsv
file was generated from
test.eigenvec
using the following
awk
command: awk 'NR==1 { sub(/^#/, ""); $1 = ""; sub(/^\t/, ""); sub(/^IID\t/, "sample_id\t"); print; next } { $1 = ""; sub(/^\t/, ""); print }' OFS='\t' test.eigenvec > test.tsv nf-core/test-datasets