Gisela Gabernet
05/20/2026, 2:40 PM26.10.1, since the auto type detection in Nextflow has been disabled, now trying to set a flag to false (e.g. --skip_multiqc false) will interpret this as string "false" which will be truthy because Groovy interprets strings as true. I therefore went ahead and ported all params for nf-core/airrflow to the new params block in <http://main.nf|main.nf>. However, now I'm having some failures in the pipeline linting for the nextflow.config and the nextflow_schema.config since the params are no longer in nextflow.config. For now I'm disabling these linting tests, but let me know if there is a better way to deal with this right now.Nicolas Vannieuwkerke
05/20/2026, 2:46 PMGisela Gabernet
05/20/2026, 2:49 PMNicolas Vannieuwkerke
05/20/2026, 2:57 PM