One more question (which we might be able to solve with @mashehu tomorrow?) -- I created a stub for a bigwig list for the

cageronly

test run:

id,single_end,path,new_name
S1,true,[?/testdata/v2/bigwig/S1.Signal.Unique.str1.out.wig.bw ?/testdata/v2/bigwig/S1.Signal.Unique.str2.out.wig.bw],S1
S2,true,[?/testdata/v2/bigwig/S2.Signal.Unique.str1.out.wig.bw ?/testdata/v2/bigwig/S2.Signal.Unique.str2.out.wig.bw],S2

However, I don't know what to put here instead of

?

which should be the location of the test data (our

test-datasets

repository).

you can add the raw github url there:

<https://raw.githubusercontent.com/nf-core/test-datasets/cageseq/>

Nice! Thank you Matthias!