<#C02FC6VFQG1> Hello, I got the below execution re...
# metatdenovo
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#C02FC6VFQG1 Hello, I got the below execution report after I ran this command line: nextflow run nf-core/metatdenovo -profile conda --input samplesheet.csv --assembler megahit --save_bam --save_samtools --orf_caller prokka --eukulele_dbpath path/to/db /home/nspmpego/microbiota_photoperiodism/metatranscriptomics/eggnog/ --outdir results/ --email "myemail". Is the command ok? I am unsure about the --eukelele_path command. What does the error in the execution report mean, and how can I fix it? Any help would be greatly appreciated. The exit status of the task that caused the workflow execution to fail was: null. The full error message was: Error executing process > 'NFCORE_METATDENOVOMETATDENOVOSUB_EUKULELE:EUKULELE_SEARCH (megahit.prokka)' Caused by: Process exceeded running time limit (16h) Command executed: rc=0 mkdir contigs gunzip -c prokka.faa.gz > ./contigs/proteins.faa EUKulele \ -m mets \ \ --protein_extension .faa \ --reference_dir db \ -o megahit.prokka_[] \ --CPUs 12 \ -s \ contigs || rc=$? gzip megahit.prokka_[]/mets_full/diamond/*.out find megahit.prokka_[]/ -name "*.csv" | xargs gzip gzip megahit.prokka_[]/taxonomy_estimation/*.out cat <<-END_VERSIONS > versions.yml "NFCORE_METATDENOVOMETATDENOVOSUB_EUKULELE:EUKULELE_SEARCH": eukulele: $(echo $(EUKulele --version 2>&1) | sed -n 's/.* \([0-9]\+\.[0-9]\+\.[0-9]\+\).*/\1/p') END_VERSIONS if [ $rc -le 1 ]; then exit 0 else exit $rc; fi Command exit status: - Command output: (empty) Work dir: /home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta/work/f2/6ff4027d94eb82d726802074e2bd6d Tip: view the complete command output by changing to the process work dir and entering the command
cat .command.out
The workflow was completed at 2026-05-13T052144.895650384+01:00 (duration: 1d 15h 46m 41s) (edited) execution_report_2026-05-11_13-35-01.html