nextflow run nf-core/sarek -r 3.8.1 \
    -profile singularity,hpcbio \
    --sentieon_extension \
    --aligner sentieon-bwamem \
    --tools sentieon_dedup \
    --outdir ./results_test_sentieon_run3 \
    --custom_config_base /some/path/hpcbio/apps/configs/ \
    --input samplesheet.csv \
    --save_reference true \
    --save_mapped true \
    --save_output_as_bam true \
    --download_cache true \
    --outdir_cache /some/path/hpcbio/data/sarek/3.8.1 \
    --no_intervals