A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Maybe this needs to be implemented: `cellpose.contrib.distributed_cellpose`

<https://cellpose.readthedocs.io/en/v3.1.1.1/distributed.html?utm_source=chatgpt.com>

Or take a look at sopa. It looks sopa's patch-cellpose-segmentation way is there implemented in Nextflow.

this is possible with the sopa API
<https://prism-oncology.github.io/sopa/tutorials/api_usage/#cell-segmentation>

we keep this for later releases though, I will implement the patching modules later

we've got a subworkflow at Sanger as well:
<https://github.com/cellgeni/nf-modules/blob/main/subworkflows/sanger-cellgeni/tiled_segmentation/main.nf>

This is a good one. I was struggling with cellopse's "single GPU only" problem for a while.