just took a look at the opt repo.. you guys really pick 'em 😅

Ironically it actually looks pretty easy to package, they've just done it in a super weird way

must.. not.. get.. nerd.. sniped.. 😆

Anyway, let me know once there's a source

Dockerfile

somewhere (eg. alongside the module is ideal) @Sameesh Kher, confirm that the

khersameesh24/opt:v0.0.1

image is built using it, and I'll move it over to quay.io

Longer term, opt seems not too bad but would probably need a bunch of upstream changes.. • mummer4 is available on macos from bioconda, despite what the readme says? • everything in their

environment.yml

under

pip

is actually already on conda-forge + bioconda, so no need for pip at all ◦ or rather, no need to handle any of this in the repo - it could all be within the bioconda recipe. the repo could be pure python and not care • Could easily be a regular python package with a single CLI that has a subcommand for running the streamlit app ◦ would probably still want the optional install step to get the refs, but again that could be a CLI subcommand • package and release on bioconda Basically the whole thing could quite easily be a regular self-contained python package without any of the random bash magic or requirements for homebrew, as far as I can tell..