#2036 New test data for sourmash Pull request opened by erikrikarddaniel This adds test files for improved sourmash tests for magmap. Genomes 10 species-representative genomes were selected from release R10-RS226 of the GTDB each representing a phylum: GCA_025449695.1_ASM2544969v1_genomic.fna.gz GCA_036004205.1_ASM3600420v1_genomic.fna.gz GCA_036380955.1_ASM3638095v1_genomic.fna.gz GCA_934196075.1_ERR7738170_bin.192_genomic.fna.gz GCF_010645065.1_ASM1064506v1_genomic.fna.gz GCA_028291545.1_ASM2829154v1_genomic.fna.gz GCA_036270055.1_ASM3627005v1_genomic.fna.gz GCA_041659285.1_ASM4165928v1_genomic.fna.gz GCA_944323475.1_BRZ_DT_bin83_genomic.fna.gz GCF_964229035.1_CJ01B_3.20_genomic.fna.gz Simulated reads Fastq files were created from the contig files using

randomreads.sh

from BBMap with 100,000 reads each. Three sample files were created from the random read files, sampling only 100 read pairs from each. To make sure the three sample files map to slightly but not completely overlapping sets of genomes, they were created from the following genome read files: `sourmash_10genomes_sample00_R{1,2}.fastq.gz`: GCA_025449695.1 GCA_028291545.1 GCA_036004205.1 GCA_036270055.1 GCA_036380955.1 GCA_041659285.1 GCA_934196075.1 `sourmash_10genomes_sample01_R{1,2}.fastq.gz`: GCA_025449695.1 GCA_028291545.1 GCA_036004205.1 GCA_036270055.1 GCA_944323475.1 GCF_010645065.1 GCF_964229035.1 `sourmash_10genomes_sample02_R{1,2}.fastq.gz`: GCA_025449695.1 GCA_028291545.1 GCA_036380955.1 GCA_041659285.1 GCF_010645065.1 The three read files are referred to in

samplesheets/sourmash_10genomes_samples.csv

. Sourmash index A Sourmash index file (

sourmash_10genomes.index.sbt.zip

) was also made from the 10 genomes. nf-core/test-datasets