Only for docker GitHub tests:

> Join mismatch for the following entries: key=[id:nucl_hmmer] values=
    >
    >
    > Join mismatch for the following entries: key=[id:nucl_hmmer] values=

The join mismatches I often find are red herrings due to an upstream issue

Could this be a runner issue similar to the singularity network problem ones, or..?

No clue, probably that it's already running code to me less likely due to a failed pull at least...