Hi. I'm trying to run raredisease (2.6.0) for just...
# raredisease
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Hi. I'm trying to run raredisease (2.6.0) for just the germline CNV analysis for a targeted panel. I've set type to wes, and set skip for everything else:
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Analysis options
  analysis_type             : wes
  skip_subworkflows         : mt_annotation,mt_subsample,me_calling,me_annotation,repeat_annotation,repeat_calling,snv_annotation,snv_calling,sv_annotation,generate_clinical_set
  skip_tools                : fastp,gens,haplogrep3,peddy,smncopynumbercaller,vcf2cytosure,fastqc,qualimap,eklipse,ngsbits
I'm getting a parameter validation error:
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* Missing required parameter(s): intervals_wgs, intervals_y
Previous discussion on these params indicate they're for WGS coverage stats and not appropriate for WES, and it seems like this was addressed - https://github.com/nf-core/raredisease/pull/396#event-10006745584 Any way to skip this or get this validation to be quiet, or just pull/generate the files in order to provide them?