I am trying to lint a pipeline, and I get no lint results at all because in one of the lint tests

nextflow config

tries to fetch a remote config file and fails (due to a known issue with Nextflow and authenticated proxies). Is there a way to deal with this more gently than by disabling all offending lint tests in the nf-core config?

grab the configs repo locally and point to it

Exclude that particular file and lint the rest?

nextflow lint -exclude <file>

?

@Maxime Garcia I tried, but it seems that the tools generate some config on the fly that is not an exact copy of the pipeline's config, so I cannot edit this part manually. I don't know this section of the tools well enough to understand the details.

Oh I see

The line that fails is not even in

nextflow.config

🥲 (it only includes the 4 files in

conf/

, while the error is related to

nfcore_custom.config

)