which pipelines can i give a test sync to see how ...
# team-maintainers
m
which pipelines can i give a test sync to see how the just release 4.0.0 tools release looks like and if there are any bugs? (best case the pipline is already on 3.5.1)
e
proteinfamilies please!
✅ 1
m
rnavar
seqinspector
j
#C062H82UCRG
If you're quick 😉
@mashehu is that of interest? I am motivated to do it right now as I just opened a release review 😉 (I saw you opened #C031QH57DSS not #C062H82UCRG)
👍🏻 1
m
is createtaxdb not yet following strict syntax? https://github.com/nf-core/tools/actions/runs/25051759488/job/73381130045#step:10:265 (need to update the sync action to not use the latest nextflow version)
j
IT should be 🤔
Weird, that one was because nextflow autoformatter was forcing the wrong fix (should have had quotes but without it was separating the
$
from the
{
Pushed the fix to dev
Re-triggering
m
Copy code
Could not find meta.yml for MULTIQC at multiqc/meta.yml
confused dog
I tried to update all modules and subworkflows, and tools deleted all
conf/containers_*.config
files
m
yes, it deletes them if they are empty.
Could not find meta.yml for MULTIQC at multiqc/meta.yml
this one is weird. which pipeline?
m
I see
FileNotFoundError: [Errno 2] No such file or directory: 'prek'
on the
Run nf-core pipelines lint
step for linting
Apart from that, I like the new errors added by the strict syntax, I directly noticed there was something wrong with MOSDEPTH when I updated it (wrong number of input). It was made clear because I had that warning for each modules I tried to update, and I tried to update them all 🤣
j
m
Matthias is on it, fix will come with 4.0.1
🙌 1
j
But else the template merge felt smooth (if you have topics and nextflow lint already covered) 🙂
100 rainbow 1
🙌🏻 1