A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Why would the args here:

```    withName: KMCP_COMPUTE {
        ext.prefix = { "${meta.id}-kmcp-compute" }
        ext.args   = {
            [
                params.kmcp_compute_byfile ? "" : "--by-seq",
                params.kmcp_compute_options,
            ].join(' ').trim()
        }
        publishDir = [
            enabled: false
        ]
    }```
in a `modules.conf`

Not reach this module:

<https://github.com/nf-core/modules/blob/master/modules/nf-core/kmcp/compute/main.nf>

HELP

nvm looks liek the others expect that

shoiuld it be just `[ ]` not `{ [ ] }`

```        ext.args   = [
                params.kmcp_compute_byfile ? "" : "--by-seq",
                params.kmcp_compute_options,
            ].join(' ').trim()```

Alternatively, is it being overwritten by another ext.args somewhere else

1. Sorry yeah, I originally had just `[]` and that wasn't working (was experiemtnign as I see sarek includes the `{}`
2. Yes, it is being included as the `--kcmp_compute_options` works ...
3. I don't think so but I'll hceck

OH GOD DAMN IS IT ITS THE OVERWRRITINGT THING BECAUSE OF HTE ORDER OF MODULES vs NEXTFLOW CONFIG