Hello MAGGERS, Are the nf-core running offline in...
# mag
s
Hello MAGGERS, Are the nf-core running offline instructions up to date?
I followed instructions here https://nf-co.re/docs/usage/offline but this did not seem to work. My compute nodes do not have internet access.
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nextflow run nf-core-mag_5.4.2/5_4_2 -offline
curl: (7) Failed to connect to <http://www.nextflow.io|www.nextflow.io> port 443 after 7115 ms: Couldn't connect to server

 N E X T F L O W   ~  version 25.10.4

ERROR ~ Unable to parse config file: '/scratch/bougous/bandwidth/mag/wf01_spikedHost/nf-core-mag_5.4.2/5_4_2/nextflow.config'

  Cannot read config file include: <https://raw.githubusercontent.com/nf-core/configs/master/nfcore_custom.config>


 -- Check '.nextflow.log' file for details
j
That command looks really weird
what is
nf-core-mag_5.4.2/5_4_2
? and there is no
-offline
parameter as far as I know?
s
nf-core-mag_5.4.2/5_4_2
is what
nf-core pipelines download <pipeline>
basically downloads
-offline
is a
nextflow run -help
option
j
Oh that's new to me! sorry!
👍 1
I'm not sure unfortunately. The instructions are generic, so this would presumably affect more people... I think you should ask on #CE6SDBX2A
👍 1
I've not got any experience myself
@Salim Bougouffa did you say you solved it somewhere?