Javan Okendo
04/16/2026, 5:33 PMnextflow run nf-core/fetchngs --input SRR_Acc_List.txt -resume -profile biowulf --outdir na_rna_fastq but I am getting the following error: How Do I fix this?
!! Only displaying parameters that differ from the pipeline defaults !!
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If you use nf-core/fetchngs for your analysis please cite:
* The pipeline
<https://doi.org/10.5281/zenodo.5070524>
* The nf-core framework
<https://doi.org/10.1038/s41587-020-0439-x>
* Software dependencies
<https://github.com/nf-core/fetchngs/blob/master/CITATIONS.md>
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WARN: The following invalid input values have been detected:
* --igenomes_base: /fdb/igenomes_nf/
ERROR ~ Could not derive file type from /asm/t2tMap/bam_fixed_rg/SRR_Acc_List.txt. Please specify the file extension (CSV, TSV, YML and YAML are supported).
-- Check script '/data/okendojo/.nextflow/25.10.0/assets/nf-core/fetchngs/subworkflows/nf-core/utils_nfvalidation_plugin/main.nf' at line: 57 or see '.nextflow.log' file for more detailsMatthieu Muffato
04/16/2026, 7:28 PMSRR_Acc_List.txt to SRR_Acc_List.tsv (assuming you have 1 accession number per line)Javan Okendo
04/16/2026, 7:31 PM