I am running `nextflow run nf-core/fetchngs --inpu...
# fetchngs
j
I am running
nextflow run nf-core/fetchngs --input SRR_Acc_List.txt -resume -profile biowulf --outdir na_rna_fastq
but I am getting the following error: How Do I fix this?
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!! Only displaying parameters that differ from the pipeline defaults !!
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If you use nf-core/fetchngs for your analysis please cite:

* The pipeline
  <https://doi.org/10.5281/zenodo.5070524>

* The nf-core framework
  <https://doi.org/10.1038/s41587-020-0439-x>

* Software dependencies
  <https://github.com/nf-core/fetchngs/blob/master/CITATIONS.md>
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WARN: The following invalid input values have been detected:

* --igenomes_base: /fdb/igenomes_nf/


ERROR ~ Could not derive file type from /asm/t2tMap/bam_fixed_rg/SRR_Acc_List.txt. Please specify the file extension (CSV, TSV, YML and YAML are supported).

 -- Check script '/data/okendojo/.nextflow/25.10.0/assets/nf-core/fetchngs/subworkflows/nf-core/utils_nfvalidation_plugin/main.nf' at line: 57 or see '.nextflow.log' file for more details
m
Rename
SRR_Acc_List.txt
to
SRR_Acc_List.tsv
(assuming you have 1 accession number per line)
j
This worked. Thanks
🙌 1