Hello I was checking the options in the megahit step and I r nf-core #mag

Hello, I was checking the options in the megahit s...

Carla Pereira-Garcia

04/15/2026, 11:56 AM

Hello, I was checking the options in the megahit step and I realise that the option

--presets meta

is not added by default. Is this on purpose?

James Fellows Yates

04/15/2026, 12:35 PM

I don't think that is an option

James Fellows Yates

04/15/2026, 12:35 PM

image.png

James Fellows Yates

04/15/2026, 12:35 PM

Away from defaults, there are meta-sensitive and meta-large

James Fellows Yates

04/15/2026, 12:35 PM

Or is this what you mean?

Carla Pereira-Garcia

04/15/2026, 1:17 PM

oh thats right! Im sorry, I thought it had it but I was now checking it and its for spades not for megahit, my bad...

2 Views