#1985 Add test data for nf-core/denovoproteomics Pull request opened by BioGeek Summary Add test data for the nf-core/denovoproteomics pipeline — a database-free end-to-end proteomics pipeline using deep learning de novo peptide sequencing. Files added | File | Description | Size | | ----------------------- | -------------------------------------------- | ------ | | samplesheet.csv | Samplesheet for standard mode (2 samples) | <1 KB | | samplesheet_mapping.csv | Samplesheet for mapping mode (2 samples) | <1 KB | | testdata/sample1.mzML | DDA mzML, 48 spectra (34 MS2), Thermo LTQ FT | 4.9 MB | | testdata/sample2.mzML | DDA mzML, 48 spectra (34 MS2), Thermo LTQ FT | 4.9 MB | | README.md | Branch documentation | <1 KB | Cross-branch references The pipeline also references existing data from the

modules

branch for mapping mode tests: •

data/proteomics/database/yeast_UPS_mini.fasta

(4.2 KB, 10 proteins) Total branch size ~10 MB (2 mzML files + samplesheets + README). Note This PR should be merged as a new branch (

denovoproteomics

), not into

master

, following the nf-core/test-datasets convention. 🤖 Generated with Claude Code nf-core/test-datasets