A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Delocalised gtf2bed from <#CE8SSJV3N>, as has been requested of me in the past (think you asked <@UE6D8290F>?): <https://github.com/nf-core/modules/pull/11149>

It's Perl, so I'm feeling very retro and it can probably be replaced with something better, but it's there for historical consistency until it is.

Actually claude found one someone else wrote, but I'm being consistent first

and we have a different version of this gtf2bed script

<https://github.com/nf-core/rnavar/blob/dev/modules/local/gtf2bed/main.nf>

I'll be switching to this new version, but that R script seemed so simple

It's because it's working that I need to change it