Profile apptainer for me regular server not cluster nf-core #mhcquant

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Profile apptainer for me, regular server, not clus...

# mhcquant

Denis Komarov

04/09/2026, 9:00 AM

Profile apptainer for me, regular server, not cluster

Jonas S

04/09/2026, 9:03 AM

You mean https://github.com/nf-core/mhcquant/pull/438 right?

Denis Komarov

04/09/2026, 9:04 AM

Yes

Jonas S

04/09/2026, 9:05 AM

Yep only

dev

for now. Use

-r dev

in the nextflow call to run it. I hope to release 3.2.0 this month. Still cooking on a clean SDRF-support https://github.com/nf-core/mhcquant/issues/277

Denis Komarov

04/09/2026, 9:05 AM

Thank you very much, I'll try now

🙌 1

Denis Komarov

04/09/2026, 9:36 AM

Failed at summarize results?

Denis Komarov

04/09/2026, 9:37 AM

image.png

Jonas S

04/09/2026, 9:39 AM

🤔 That is odd. Could you share the input of the summarize results file with me? It is located in the workdir

Denis Komarov

04/09/2026, 9:40 AM

lysate_scr_scramble_exported.tsv

🙏 1

Jonas S

04/09/2026, 1:10 PM

A small bug sneaked in with the openms version bump to 3.5.0. A quick workaround PR for you: https://github.com/nf-core/mhcquant/pull/444

Jonas S

04/09/2026, 1:10 PM

Feel free to review 🙂

Jonas S

04/09/2026, 1:33 PM

Your PR has been merged. You can do

nextflow drop nf-core/mhcquant

to remove the current dev version of yours and rerun your normal command, the newer dev version is then pulled automatically

Jonas S

04/09/2026, 1:33 PM

Can you check if it works on your side?

Denis Komarov

04/09/2026, 1:47 PM

Yup, all looks good

Denis Komarov

04/09/2026, 1:47 PM

Thanks 🙂

🙌 1

Jonas S

04/09/2026, 1:48 PM

Great, thanks for the issue report 🤝

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