Using a patch to strip STAR from the RSEM modules ...
# request-reviewj
Jonathan Manning
04/07/2026, 8:36 AMUsing a patch to strip STAR from the RSEM modules in #CE8SSJV3N, since we now run STAR externally and pass alignments to RSEM: https://github.com/nf-core/rnaseq/pull/1752. One less dependency to wrangle, and the pinned STAR version was a problem with ARM.
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Jonathan Manning
04/07/2026, 9:33 AMThanks @Maxime Garcia, commented on your comment 🙂
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Jonathan Manning
04/08/2026, 8:25 AMHey @Maxime Garcia, tiny bit of cleanup for this one? https://github.com/nf-core/rnaseq/pull/1769
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Maxime Garcia
04/08/2026, 8:26 AMLGTM
Maxime Garcia
04/08/2026, 8:27 AMAre you missing reviews on any PRs for #CE8SSJV3N?
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Jonathan Manning
04/08/2026, 8:28 AMI'm just mopping up failures associated with the release PR's conda testing. Then I'll work harder at getting an external for that one
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Maxime Garcia
04/08/2026, 8:28 AMgood luck, ping me whenever
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Jonathan Manning
04/08/2026, 8:35 AMI think this is the last fix: https://github.com/nf-core/rnaseq/pull/1770
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Jonathan Manning
04/08/2026, 8:36 AMactually no, one more, but almost....