Hi nfcore gang, I'm reposting this as I'm still stuck: I pulled the latest dev version, ran in narrowpeak mode on the IFB SLURM HPC (using the ifb_core config) - same happens in broadpeak - and it crashes at the MERGED_LIBRARY_CONSENSUS_PEAKS:MACS3_CONSENSUS step. It looks like the pipeline is loading a very outdated version of rlang inot supported UpSetR.

Error executing process > 'NFCORE_ATACSEQ:ATACSEQ:MERGED_LIBRARY_CONSENSUS_PEAKS:MACS3_CONSENSUS (consensus_peaks)'

Caused by:
  Process `NFCORE_ATACSEQ:ATACSEQ:MERGED_LIBRARY_CONSENSUS_PEAKS:MACS3_CONSENSUS (consensus_peaks)` terminated with an error exit status (1)

(...)

Command exit status:
  1

Command output:
  (empty)

Command error:
  INFO:    Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred
  INFO:    Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
  WARNING: While bind mounting '/shared:/shared': destination is already in the mount point list
  Error: package or namespace load failed for 'UpSetR' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
   namespace 'rlang' 0.4.12 is being loaded, but >= 1.1.0 is required
  Execution halted

I'm attaching the command.run from the wd and the tools version. Could someone please look into this as I don't know what can be done on my side link to my previous post https://nfcore.slack.com/archives/CE5EL6326/p1773238134341339 command.run https://nfcore.slack.com/files/U09GUS6B162/F0AM1S0E6JZ/command.run tools versions https://nfcore.slack.com/files/U09GUS6B162/F0AM59AKG2E/nf_core_atacseq_software_mqc_versions.yml Thanks in advance