GitHub
03/30/2026, 11:47 AMgit clone <url> --branch <branch> --single-branch
• Make a PR on a new branch with a relevant name
• Wait for the PR to be merged
• Use this newly created branch for your tests
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This pull request adds detailed documentation to the testdata/metagroot/README.md file, describing how to generate a test HMM dataset for MetagRoot. The new instructions clarify the process for obtaining, preparing, and packaging the test data.
Documentation improvements:
• Added step-by-step instructions for downloading, extracting, concatenating, compressing, scanning, subsetting, and repackaging HMM profile files to create a test dataset, including example shell commands.
• Clarified the difference between the HMM.tar.gz and subset_metagroot.hmm files, and provided references to the original data sources.
nf-core/test-datasetsGitHub
03/30/2026, 12:28 PMmetagroot_test.hmm.gz file here, as in the other parallel folders (e.g., nmpfams, pfam, etc) :D
The deal is, you need to keep 1-2 matching HMMs from the mother file (which I see you already did with your scripts), so just push that one file :D
nf-core/test-datasetsGitHub
03/30/2026, 3:36 PMmetagroot_test.hmm.gz before merging (instead of metagrootdb_test.hmm.gz (nitpicking). And have fun with testing the subworkflow :D
nf-core/test-datasetsGitHub
03/30/2026, 3:41 PM