Evangelos Karatzas
03/30/2026, 10:48 AMcaalm software for protein annotation (cazyme families and levels) through ai prediction.
Accompanied by a downloadmodels setup step, which is only stub tested (its real test happens during the main caalm_caalm nf-test, to not waste resources.
https://github.com/nf-core/modules/pull/11087
New protein annotation software for CAZyme prediciton from amino acid sequences.
PR includes the setup module needed to download models from hugging face.
The bioconda recipe review process is slow, so for now, using a pip installation (env and containers through Seqera Containers).
This is the CPU version. Will probably create a separate GPU (dramatic speed increase) one after this gets merged.Evangelos Karatzas
03/30/2026, 11:30 AM