A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

<https://github.com/nf-core/test-datasets/pull/1947|#1947 Add ONT telomere test data (GIAB HG002)>
Pull request opened by <https://github.com/pinin4fjords|pinin4fjords>
*Summary*

• Add 17 real ONT telomeric reads from GIAB HG002 for testing telomere analysis tools (e.g. telogator2)
• Source: <https://ont-open-data.s3.amazonaws.com/giab_2025.01/basecalling/sup/HG002/PAW70337/calls.sorted.bam|GIAB 2025.01 ONT release>, SUP basecalling, R10.4.1
• Regions: last 10 kb of chr1 and chr2 (telomeric ends), downsampled to ~17 reads
• Files: `data/genomics/homo_sapiens/nanopore/bam/HG002_ont_telomere/HG002_ont_tel_sub.bam` (~491 KB) + index
• Includes README with regeneration instructions

*Context*

Needed for the new `telogator2` nf-core module (<https://github.com/nf-core/modules/pull/11033|nf-core/modules#11033>). Existing PacBio test BAMs don't contain telomere reads, so telogator2 can only test its "no telomere reads" fallback path.
:robot_face: Generated with <https://claude.com/claude-code|Claude Code>
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

Review on #1947 Add ONT telomere test data (GIAB HG002)
Review approved by <https://github.com/fellen31|fellen31> on <https://github.com/pinin4fjords|pinin4fjords's> pull request
:100:
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

<https://github.com/nf-core/test-datasets/pull/1947|#1947 Add ONT telomere test data (GIAB HG002)>
Pull request merged by <https://github.com/pinin4fjords|pinin4fjords>
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>