Hi folks! @Ben Sherman put together a PR to make the pipeline work with the upcoming Nextflow strict syntax: https://github.com/nf-core/viralrecon/pull/591 We'd love to get this merged in ASAP so that the pipeline is ready for the forthcoming Nextflow release. Any chance that we could get some eyes on it please? 🙏🏻 Happy to put more time into it but it would be great to have a first pass from maybe @Sarai / anyone else to check that you're happy with the direction so far.

I left a couple of comments! It looks good! I'm just wondering if the removed if statements from the config files are the potential causes of some errors, but I think it's going an very good direction!