What's the best way to set up an environment for making a PR to tools? I used to use Gitpod before, but now I'm not sure. Use Codespaces? or what can I do with Pixi locally?

codespaces or just

uv sync

Thanks. I did

uv run pre-commit run --files nf_core/modules/lint/main_nf.py

after. Is there anything else I should run?

pre-commit install

to get the commit hooks set up

uv run prek install -f

doesn't work, although I think the

uv run pre-commit install

already ran with the

pre-commit run ..

yes