Hi, pipeline is running well so far for me, but I am wondering: I have 4 .fastq files for 1 sample (paired end, and spread across 2 lanes). How should I arrange this in the samplesheet so the pipeline correctly interprets this as 1 sample? Thanks!

Just use the identical name in the `sample` column.

Hi, running into a problem: Command wrapper: [2026-03-28T012058.028] error: * JOB 7623815 ON d11-47 CANCELLED AT 2026-03-28T012058 DUE TO TIME LIMIT * I am a bit surprised as I am requesting 48hrs through slurm, and we only have 12 samples. The job fails at ~10hrs and it doesn't always fail on the same process. Is the best way to solve this by using a custom config with the -c parameter?