Hello, I am facing same issues in running manta within sarek. Specifically, I am getting this error:

`ERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (mgpf-ib001-10-000-000)'
Caused by:
 Process NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (mgpf-ib001-10-000-000) terminated with an error exit status (1)
Command executed:
configManta.py 
 --bam mgpf-ib001-10-000-000.recal.bam 
 
 --reference Homo_sapiens_assembly38.fasta 
 --runDir manta 
 --callRegions wgs_calling_regions_noseconds.hg38.bed.gz \
python manta/runWorkflow.py -m local -j 30
mv manta/results/variants/candidateSmallIndels.vcf.gz 
 mgpf-ib001-10-000-000.manta.candidate_small_indels.vcf.gz
 mv manta/results/variants/candidateSmallIndels.vcf.gz.tbi 
 mgpf-ib001-10-000-000.manta.candidate_small_indels.vcf.gz.tbi
 mv manta/results/variants/candidateSV.vcf.gz 
 mgpf-ib001-10-000-000.manta.candidate_sv.vcf.gz
 mv manta/results/variants/candidateSV.vcf.gz.tbi 
 mgpf-ib001-10-000-000.manta.candidate_sv.vcf.gz.tbi
 mv manta/results/variants/diploidSV.vcf.gz 
 mgpf-ib001-10-000-000.manta.diploid_sv.vcf.gz
 mv manta/results/variants/diploidSV.vcf.gz.tbi 
 mgpf-ib001-10-000-000.manta.diploid_sv.vcf.gz.tbi
cat <<-END_VERSIONS > versions.yml
 "NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE":
 manta: $( configManta.py --version )
 END_VERSIONS
Command exit status:
 1`

I am also running other modules (tiddit, strelka, mutect2) and they did not report any error. I also tried to give as input the fastq to manta instead of BAM files, but I got the same error. Did anyone experienced this same issue? Thanks for your help!

No need to post both in #CE6SDBX2A and #CGFUX04HZ